ENSIPUP00000006830 protein (Ictalurus punctatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSIPUP00000006830

annotation not available (147 aa)

Predicted Functional Partners:

ENSIPUP00000025416

0.437

ENSIPUP00000018901

0.409

ENSIPUP00000024154

0.401

ENSIPUP00000025488

0.400

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSIPUP00000006830	ENSIPUP00000018901	annotation not available	annotation not available	0.409
ENSIPUP00000006830	ENSIPUP00000024154	annotation not available	annotation not available	0.401
ENSIPUP00000006830	ENSIPUP00000025416	annotation not available	annotation not available	0.437
ENSIPUP00000006830	ENSIPUP00000025488	annotation not available	annotation not available	0.400
ENSIPUP00000018901	ENSIPUP00000006830	annotation not available	annotation not available	0.409
ENSIPUP00000024154	ENSIPUP00000006830	annotation not available	annotation not available	0.401
ENSIPUP00000025416	ENSIPUP00000006830	annotation not available	annotation not available	0.437
ENSIPUP00000025488	ENSIPUP00000006830	annotation not available	annotation not available	0.400