STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108271372Putative sodium-coupled neutral amino acid transporter 8. (410 aa)    
Predicted Functional Partners:
LOC108268916
Ras-related GTP-binding protein A.
   
 0.646
lamtor2
Ragulator complex protein LAMTOR2.
    
 0.614
slc38a9
Putative sodium-coupled neutral amino acid transporter 9.
      
0.592
lamtor1
Ragulator complex protein LAMTOR1.
    
 0.584
lamtor5
Hepatitis b virus x-interacting protein-like protein.
    
 0.573
lamtor4
Ragulator complex protein LAMTOR4.
    
 0.547
LOC108257307
Regulating synaptic membrane exocytosis protein 2-like.
   
 
 0.496
LOC108257276
Regulating synaptic membrane exocytosis protein 2-like.
   
 
 0.496
RIMS2
Regulating synaptic membrane exocytosis protein 2-like.
   
 
 0.496
atp6v0d1
V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.
    
 0.491
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
Server load: low (18%) [HD]