Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC100304628CC chemokine SCYA102 precursor. (135 aa)    
Predicted Functional Partners:
LOC100304588
Small inducible cytokine A3 isoform X1.
      
 0.599
LOC108270518
C-C motif chemokine 21a-like.
      
 0.599
LOC100304641
CXCL2-like chemokine precursor.
      
 0.582
LOC108268454
C-C motif chemokine.
      
 0.572
cxcl13
Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family.
      
 0.546
fam53b
Protein FAM53B.
      
 0.481
LOC108261914
C-X-C motif chemokine 10-like.
      
 0.422
cxcl12
Stromal cell-derived factor 1 precursor; Belongs to the intercrine alpha (chemokine CxC) family.
      
 0.421
cxcl14
C-X-C motif chemokine 14 precursor.
      
 0.421
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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