Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108256453Contactin-associated protein-like 2 isoform X1. (1294 aa)    
Predicted Functional Partners:
cntn2
Contactin-2.
   
 0.951
LOC108271503
Contactin-3-like isoform X2.
   
 0.520
LOC108271629
Contactin-4-like.
   
 0.520
ENSIPUP00000004723
annotation not available
   
 0.520
LOC108272185
Contactin-4-like.
   
 0.520
cntn5
Contactin-5 isoform X1.
   
 0.520
LOC108275552
Contactin-3-like.
   
 0.520
LOC108279529
Contactin-1-like isoform X1.
   
 0.520
CNTN1
LOW QUALITY PROTEIN: contactin-1a-like.
   
 0.520
chl1
Neural cell adhesion molecule L1-like protein isoform X1.
   
 0.438
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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