Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108274022Myosin-16-like isoform X2. (1226 aa)    
Predicted Functional Partners:
LOC108267032
Myosin light chain 1, skeletal muscle isoform-like.
   
 0.895
LOC108276089
Myosin light polypeptide 6 isoform X2.
   
 0.802
LOC108271738
Myosin light polypeptide 6.
   
 0.802
LOC108267096
Myosin light chain 1, cardiac muscle-like.
   
 0.781
myl4
Myosin light chain 4.
   
 0.781
ENSIPUP00000029744
annotation not available
   
 0.781
mle3
Myosin light chain 3 skeletal muscle isoform.
   
 0.740
LOC108276484
Troponin C, skeletal muscle-like.
   
 0.739
calm2
Calmodulin; Belongs to the calmodulin family.
   
 0.716
tnnc1
Troponin C slow skeletal and cardiac muscles.
   
 0.689
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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