samd5 protein (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSIPUP00000003996	samd5	ENSIPUP00000003996	ENSIPUP00000007771	Syntaxin-binding protein 5.	Sterile alpha motif domain-containing protein 5 isoform X4.	0.643
LOC108258483	samd5	ENSIPUP00000032379	ENSIPUP00000007771	Ras-associated and pleckstrin homology domains-containing protein 1-like isoform X1.	Sterile alpha motif domain-containing protein 5 isoform X4.	0.521
LOC108267443	LOC108274035	ENSIPUP00000020805	ENSIPUP00000030948	Sterile alpha motif domain-containing protein 7-like isoform X2.	Sterile alpha motif domain-containing protein 14-like.	0.523
LOC108267443	samd14	ENSIPUP00000020805	ENSIPUP00000018176	Sterile alpha motif domain-containing protein 7-like isoform X2.	Sterile alpha motif domain-containing protein 14.	0.523
LOC108267443	samd5	ENSIPUP00000020805	ENSIPUP00000007771	Sterile alpha motif domain-containing protein 7-like isoform X2.	Sterile alpha motif domain-containing protein 5 isoform X4.	0.538
LOC108274035	LOC108267443	ENSIPUP00000030948	ENSIPUP00000020805	Sterile alpha motif domain-containing protein 14-like.	Sterile alpha motif domain-containing protein 7-like isoform X2.	0.523
LOC108274035	samd5	ENSIPUP00000030948	ENSIPUP00000007771	Sterile alpha motif domain-containing protein 14-like.	Sterile alpha motif domain-containing protein 5 isoform X4.	0.562
kbtbd7	samd5	ENSIPUP00000033325	ENSIPUP00000007771	Kelch repeat and BTB domain-containing protein 7.	Sterile alpha motif domain-containing protein 5 isoform X4.	0.613
lancl2	samd5	ENSIPUP00000037254	ENSIPUP00000007771	lanC-like protein 2 isoform X1.	Sterile alpha motif domain-containing protein 5 isoform X4.	0.745
ptprq	samd5	ENSIPUP00000011941	ENSIPUP00000007771	Phosphatidylinositol phosphatase PTPRQ isoform X2.	Sterile alpha motif domain-containing protein 5 isoform X4.	0.614
raph1	samd5	ENSIPUP00000017604	ENSIPUP00000007771	Ras-associated and pleckstrin homology domains-containing protein 1 isoform X1.	Sterile alpha motif domain-containing protein 5 isoform X4.	0.521
raph1	tmem175	ENSIPUP00000017604	ENSIPUP00000013202	Ras-associated and pleckstrin homology domains-containing protein 1 isoform X1.	Endosomal/lysomomal potassium channel TMEM175.	0.463
samd14	LOC108267443	ENSIPUP00000018176	ENSIPUP00000020805	Sterile alpha motif domain-containing protein 14.	Sterile alpha motif domain-containing protein 7-like isoform X2.	0.523
samd14	samd5	ENSIPUP00000018176	ENSIPUP00000007771	Sterile alpha motif domain-containing protein 14.	Sterile alpha motif domain-containing protein 5 isoform X4.	0.562
samd5	ENSIPUP00000003996	ENSIPUP00000007771	ENSIPUP00000003996	Sterile alpha motif domain-containing protein 5 isoform X4.	Syntaxin-binding protein 5.	0.643
samd5	LOC108258483	ENSIPUP00000007771	ENSIPUP00000032379	Sterile alpha motif domain-containing protein 5 isoform X4.	Ras-associated and pleckstrin homology domains-containing protein 1-like isoform X1.	0.521
samd5	LOC108267443	ENSIPUP00000007771	ENSIPUP00000020805	Sterile alpha motif domain-containing protein 5 isoform X4.	Sterile alpha motif domain-containing protein 7-like isoform X2.	0.538
samd5	LOC108274035	ENSIPUP00000007771	ENSIPUP00000030948	Sterile alpha motif domain-containing protein 5 isoform X4.	Sterile alpha motif domain-containing protein 14-like.	0.562
samd5	kbtbd7	ENSIPUP00000007771	ENSIPUP00000033325	Sterile alpha motif domain-containing protein 5 isoform X4.	Kelch repeat and BTB domain-containing protein 7.	0.613
samd5	lancl2	ENSIPUP00000007771	ENSIPUP00000037254	Sterile alpha motif domain-containing protein 5 isoform X4.	lanC-like protein 2 isoform X1.	0.745