Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC108255770Serine protease inhibitor 2.1-like; Belongs to the serpin family. (419 aa)    
Predicted Functional Partners:
f2
Prothrombin; Belongs to the peptidase S1 family.
   
 0.676
serpinc1
Antithrombin-III; Belongs to the serpin family.
  
0.609
LOC108280513
Vitamin K-dependent protein C-like; Belongs to the peptidase S1 family.
   
  0.550
LOC108280516
Vitamin K-dependent protein C-like.
   
  0.550
ENSIPUP00000018174
annotation not available
   
  0.550
glrx5
Glutaredoxin-related protein 5, mitochondrial.
    
 0.543
sec24d
Protein transport protein Sec24D.
     
 0.539
sec24c
Protein transport protein Sec24C isoform X1.
     
 0.524
sec23a
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
     
 0.513
lman1
Protein ERGIC-53 isoform X1.
    
 0.503
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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