Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pdzd7PDZ domain-containing protein 7 isoform X1. (944 aa)    
Predicted Functional Partners:
ush2a
Usherin.
    
 
 0.730
adgrv1
G-protein coupled receptor 98; Belongs to the G-protein coupled receptor 2 family.
    
 
 0.729
ush1c
Harmonin.
     
0.706
LOC108255358
Whirlin-like isoform X1.
     
0.686
whrn
Whirlin isoform X1.
     
0.686
LOC108255607
Usherin-like.
    
 
 0.630
cdh23
Cadherin-23.
    
 
 0.591
LOC108273092
Peripheral plasma membrane protein CASK-like isoform X9; Belongs to the MAGUK family.
    
 0.588
cask
Peripheral plasma membrane protein CASK isoform X7; Belongs to the MAGUK family.
    
 0.588
LOC108259346
Uncharacterized protein LOC108259346.
    
 0.567
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.