Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
LOC108270054Heterogeneous nuclear ribonucleoprotein Q isoform X5. (574 aa)    
Predicted Functional Partners:
hnrnpk
Heterogeneous nuclear ribonucleoprotein K isoform X2.
   
 0.888
LOC108260302
Heterogeneous nuclear ribonucleoprotein K-like isoform X1.
   
 0.888
hnrnpm
Heterogeneous nuclear ribonucleoprotein M isoform X2.
   
 0.875
LOC108260929
Heterogeneous nuclear ribonucleoprotein C-like isoform X1.
   
 0.873
LOC108267757
Heterogeneous nuclear ribonucleoprotein C-like isoform X1.
   
 0.873
larp7
La-related protein 7.
   
 0.799
ilf2
Interleukin enhancer-binding factor 2.
   
 
 0.785
rbmx
RNA-binding motif protein, X chromosome isoform X1.
   
 0.767
ilf3
Interleukin enhancer-binding factor 3.
   
 
 0.764
hnrnpl
Heterogeneous nuclear ribonucleoprotein L isoform X1.
   
 0.757
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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