Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
miosWD repeat-containing protein mio. (880 aa)    
Predicted Functional Partners:
wdr24
WD repeat-containing protein 24 isoform X1.
    
 0.999
wdr59
WD repeat-containing protein 59 isoform X5.
    
0.999
sec13
Protein SEC13 homolog; Belongs to the WD repeat SEC13 family.
    
 0.999
seh1l
LOW QUALITY PROTEIN: nucleoporin SEH1; Belongs to the WD repeat SEC13 family.
    
 0.999
nprl3
Nitrogen permease regulator 3-like protein isoform X2.
    
 0.999
nprl2
Nitrogen permease regulator 2-like protein.
    
 0.999
depdc5
DEP domain-containing protein 5.
    
 0.999
castor1
GATS-like protein 3.
    
 0.995
kptn
Kaptin.
    
 0.994
LOC108257059
Sestrin-2-like.
    
 0.991
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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