Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
zmynd11LOW QUALITY PROTEIN: zinc finger MYND domain-containing protein 11. (552 aa)    
Predicted Functional Partners:
deaf1
Deformed epidermal autoregulatory factor 1 homolog isoform X1.
   
  
 0.751
emsy
BRCA2-interacting transcriptional repressor EMSY.
   
 
 0.750
setd5
SET domain-containing protein 5 isoform X1.
    
 
 0.706
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 
 0.704
eftud2
116 kDa U5 small nuclear ribonucleoprotein component.
    
 
 0.682
scfd1
Sec1 family domain-containing protein 1 isoform X3; Belongs to the STXBP/unc-18/SEC1 family.
      
 0.669
eif4enif1
Eukaryotic translation initiation factor 4E transporter isoform X1.
    
 
 0.656
LOC108277119
Zinc finger protein 703-like.
      
 0.651
srsf9
Serine/arginine-rich splicing factor 9.
    
 
 0.639
pnn
Pinin.
    
   0.629
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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