Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tnpo2Transportin-2 isoform X1. (901 aa)    
Predicted Functional Partners:
ipo4
Importin-4.
   
0.988
ipo5
Importin-5.
   
0.984
kpnb1
LOW QUALITY PROTEIN: importin subunit beta-1.
   
0.980
ipo7
Importin-7 isoform X1.
   
 0.974
ipo8
Importin-8 isoform X2.
   
 0.974
ipo9
Importin-9 isoform X1.
   
0.973
tnpo3
Transportin-3.
   
 0.964
ipo13
Importin-13.
   
 
 0.938
TNPO2
Transportin-2-like isoform X2.
  
  
 
0.900
nup98
Nuclear pore complex protein Nup98-Nup96 isoform X1.
   
 0.854
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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