STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
camsap3Calmodulin-regulated spectrin-associated protein 3 isoform X1. (1389 aa)    
Predicted Functional Partners:
LOC108261062
WD repeat-containing protein 47-like isoform X4.
   
 
 0.693
LOC108270434
Microtubule-actin cross-linking factor 1-like isoform X1.
    
 
 0.649
appl1
DCC-interacting protein 13-alpha isoform X3.
   
 
 0.619
appl2
DCC-interacting protein 13-beta.
   
 
 0.619
LOC108270434-2
Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5-like isoform X4.
    
 
 0.588
plekha7
Pleckstrin homology domain-containing family A member 7 isoform X8.
   
 
 0.436
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.