Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
snx14Sorting nexin-14 isoform X2. (986 aa)    
Predicted Functional Partners:
snx13
Sorting nexin-13 isoform X2.
   
 
 0.809
thyn1
Thymocyte Nuclear protein 1.
      
 0.553
mutyh
Adenine DNA glycosylase; Adenine glycosylase active on G-A mispairs.
      
 0.507
epg5
Ectopic P granules protein 5 homolog.
      
 0.498
snx25
Sorting nexin-25 isoform X1.
   
 
 0.485
LOC108269353
Uncharacterized protein LOC108269353 isoform X3.
   
 
 0.485
toe1
Target of EGR1 protein 1.
      
 0.481
blm
Bloom syndrome protein isoform X1.
   
  
 0.480
pudp
Haloacid dehalogenase-like hydrolase domain-containing protein 1a.
   
  
 0.478
synrg
Synergin gamma isoform X8.
      
 0.472
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.