STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spastSpastin; Belongs to the AAA ATPase family. (547 aa)    
Predicted Functional Partners:
ubxn7
UBX domain-containing protein 7.
   
 0.952
ist1
IST1 homolog isoform X1.
    
 0.885
ufd1
Ubiquitin fusion degradation protein 1 homolog isoform X2.
    
 0.773
chmp3
Charged multivesicular body protein 3.
   
 0.766
ubxn1
UBX domain protein 1.
   
 0.709
yod1
Ubiquitin thioesterase OTU1.
   
 0.705
atl1
Atlastin-1.
   
 
 0.690
nploc4
Nuclear protein localization protein 4 homolog.
   
 0.686
faap100
Fanconi anemia core complex-associated protein 100.
   
 0.686
atxn3
Ataxin-3.
   
 0.662
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.