STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pym1Partner of Y14 and mago A. (205 aa)    
Predicted Functional Partners:
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 0.999
LOC108262503
Protein mago nashi homolog.
    
 
 0.927
mgn
Mago nashi-like.
    
 
 0.927
eif4a3
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
    
 
 0.674
suox
Sulfite oxidase, mitochondrial.
      
 0.605
aar2
Protein AAR2 homolog.
   
  
 0.593
sec63
Translocation protein SEC63 homolog.
      
 0.570
vsir
V-type immunoglobulin domain-containing suppressor of T-cell activation isoform X2.
   
    0.570
stoml2
Stomatin-like protein 2, mitochondrial.
      
 0.526
upf2
Regulator of nonsense transcripts 2 isoform X2.
      
 0.507
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.