STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wdtc1WD and tetratricopeptide repeats protein 1 isoform X2. (609 aa)    
Predicted Functional Partners:
ddb1
DNA damage-binding protein 1.
    
 0.967
cul4a
cullin-4A; Belongs to the cullin family.
    
 0.828
cul4b
cullin-4B; Belongs to the cullin family.
    
 0.828
cops4
COP9 signalosome complex subunit 4 isoform X2.
    
 0.779
cops8
COP9 signalosome complex subunit 8.
    
 0.773
cops6
COP9 signalosome complex subunit 6.
    
 0.759
cops5
COP9 signalosome complex subunit 5.
    
 0.752
dcaf4
DDB1- and CUL4-associated factor 4.
     
 0.747
dcaf10
DDB1- and CUL4-associated factor 10.
   
 
 0.729
dcaf11
DDB1- and CUL4-associated factor 11; May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex; Belongs to the WD repeat LEC14B family.
    
 0.713
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.