STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108258370Interferon-induced protein 44-like. (275 aa)    
Predicted Functional Partners:
ubxn7
UBX domain-containing protein 7.
    
   0.678
mrpl3
39S ribosomal protein L3, mitochondrial isoform X1; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.524
LOC108275360
39S ribosomal protein L23, mitochondrial.
   
 
 0.522
mrpl27
39S ribosomal protein L27, mitochondrial.
   
 
 0.515
mrpl46
39S ribosomal protein L46, mitochondrial isoform X1.
   
 
 0.509
mrpl19
39S ribosomal protein L19, mitochondrial.
   
 
 0.499
mrpl22
39S ribosomal protein L22, mitochondrial isoform X1; Belongs to the universal ribosomal protein uL22 family.
   
 
 0.495
mrpl4
39S ribosomal protein L4, mitochondrial.
   
 
 0.492
mrpl33
39S ribosomal protein L33, mitochondrial.
   
 
 0.489
mrpl47
39S ribosomal protein L47, mitochondrial.
   
 
 0.486
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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