STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108255499Calcium/calmodulin-dependent protein kinase type II subunit beta isoform X23; Belongs to the protein kinase superfamily. (495 aa)    
Predicted Functional Partners:
calm2
Calmodulin; Belongs to the calmodulin family.
   
 0.727
LOC108263280
Calmodulin.
   
 0.727
LOC108258233
Calmodulin.
   
 0.727
LOC108270185
Myosin light chain 1/3, skeletal muscle isoform-like; Belongs to the calmodulin family.
   
 0.727
LOC108279128
Calmodulin.
   
 0.727
calm3
Calmodulin 3.
   
 0.727
kcnip4
Kv channel-interacting protein 4 isoform X1.
   
 0.704
lin7b
Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.
    
 0.689
lin7c
Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.
    
 0.689
lin7a
Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.
    
 0.689
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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