STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108280792Apolipoprotein A-I-2-like. (260 aa)    
Predicted Functional Partners:
apoa4
Apolipoprotein A-IV precursor.
  
  
 
0.905
LOC108280791
Apolipoprotein A-I-1-like.
  
  
 
0.901
LOC108267234
Uncharacterized protein LOC108267234.
   
 0.617
apob
Apolipoprotein B-100.
   
 0.617
LOC108257904
Apolipoprotein B-100-like.
   
 0.617
pltp
Phospholipid transfer protein.
     
 0.589
LOC108265499
Apolipoprotein Eb-like.
   
 
 0.586
LOC108272669
Apolipoprotein Eb-like.
   
 
0.586
lcat
Phosphatidylcholine-sterol acyltransferase isoform X1.
   
 0.576
pla2g15
Group XV phospholipase A2.
   
 0.567
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.