STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tesk1Dual specificity testis-specific protein kinase 1. (664 aa)    
Predicted Functional Partners:
mib2
E3 ubiquitin-protein ligase MIB2 isoform X1.
   
 0.578
LOC108269306
Alpha-parvin-like.
     
 0.538
LOC108271331
Alpha-parvin.
     
 0.538
parvb
Beta-parvin isoform X1.
     
 0.527
LOC108255212
Ubiquitin-conjugating enzyme E2 variant 1.
   
 0.513
ub2v1
Ubiquitin-conjugating enzyme E2 variant 1.
   
 0.513
spry4
Protein sprouty homolog 4.
    
 0.497
itsn2
LOW QUALITY PROTEIN: intersectin-2.
   
 0.485
ENSIPUP00000019729
annotation not available
   
 0.485
LOC108269989
Intersectin-2-like isoform X1.
   
 0.485
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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