STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sec13Protein SEC13 homolog; Belongs to the WD repeat SEC13 family. (320 aa)    
Predicted Functional Partners:
wdr24
WD repeat-containing protein 24 isoform X1.
    
 0.999
mios
WD repeat-containing protein mio.
    
 0.999
nup133
Nuclear pore complex protein Nup133.
    
 0.999
wdr59
WD repeat-containing protein 59 isoform X5.
    
 0.999
nup98
Nuclear pore complex protein Nup98-Nup96 isoform X1.
    
 0.999
seh1l
LOW QUALITY PROTEIN: nucleoporin SEH1; Belongs to the WD repeat SEC13 family.
    
0.999
nup85
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
    
 0.999
sec31a
Protein transport protein Sec31A isoform X1.
    
 0.999
sec24b
Protein transport protein Sec24B isoform X1.
   
 0.998
sec23a
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.998
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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