STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108256306Uncharacterized protein LOC108256306. (162 aa)    
Predicted Functional Partners:
LOC108256149
Uncharacterized protein LOC108256149.
  
     0.514
LOC108275426
CD59 glycoprotein-like.
  
     0.513
ENSIPUP00000030095
Defensin, beta-like 3.
  
     0.510
LOC108260923
E3 ubiquitin-protein ligase TRIM39-like.
  
     0.508
LOC108266832
OX-2 membrane glycoprotein-like.
  
     0.489
ENSIPUP00000023960
annotation not available
  
     0.483
ENSIPUP00000002120
annotation not available
  
     0.482
ENSIPUP00000012192
Zona pellucida sperm-binding protein 4-like.
  
     0.472
LOC108276850
Nuclear factor 7, brain-like.
  
     0.467
LOC108267411
Uncharacterized protein LOC108267411.
  
     0.462
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.