STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108276550Protocadherin Fat 3-like. (4250 aa)    
Predicted Functional Partners:
fjx1
Four-jointed box protein 1.
   
 
 0.697
lix1l
LIX1-like protein.
   
 0.653
lix1
Protein limb expression 1 homolog isoform X1.
   
 0.642
LOC108264285
Atrophin-1-like isoform X1.
    
 0.568
LOC108271943
Arginine-glutamic acid dipeptide repeats protein-like isoform X1.
    
 0.568
rere
Arginine-glutamic acid dipeptide repeats protein isoform X4.
    
 0.568
fat3
Protocadherin Fat 3 isoform X1.
  
0.532
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.