STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108267046Granzyme B(G,H)-like; Belongs to the peptidase S1 family. (254 aa)    
Predicted Functional Partners:
LOC108264602
Uncharacterized protein LOC108264602 isoform X1.
     
 0.945
LOC100304635
Caspase 8 isoform X1; Belongs to the peptidase C14A family.
    
 0.932
LOC108273129
Caspase-8-like; Belongs to the peptidase C14A family.
    
 0.932
LOC108266930
Caspase-8-like isoform X1; Belongs to the peptidase C14A family.
    
 0.932
LOC108260860
Caspase-3-like; Belongs to the peptidase C14A family.
    
 0.910
casp7
Caspase-7 isoform X1; Belongs to the peptidase C14A family.
    
 0.908
casp3
Caspase-3 isoform X1; Belongs to the peptidase C14A family.
    
 0.908
LOC108273098
Caspase-8-like isoform X1; Belongs to the peptidase C14A family.
    
 0.907
parp1
Poly [ADP-ribose] polymerase.
   
  0.904
lmnb1
lamin-B1 isoform X2; Belongs to the intermediate filament family.
    
 0.903
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.