LOC108268005 protein (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC108268005

Probable G-protein coupled receptor 158. (1231 aa)

Predicted Functional Partners:

rgs7

0.595

LOC108269497

0.595

LOC108257637

0.595

gnb5

0.577

ENSIPUP00000024490

0.577

LOC108273767

0.508

LOC108278703

0.508

rgs11

0.508

gpr156

0.449

ate1

0.418

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSIPUP00000024490	LOC108257637	ENSIPUP00000024490	ENSIPUP00000028239	Guanine nucleotide binding protein (G protein), beta 5b.	Regulator of G-protein signaling 6-like.	0.825
ENSIPUP00000024490	LOC108268005	ENSIPUP00000024490	ENSIPUP00000018605	Guanine nucleotide binding protein (G protein), beta 5b.	Probable G-protein coupled receptor 158.	0.577
ENSIPUP00000024490	LOC108269497	ENSIPUP00000024490	ENSIPUP00000021525	Guanine nucleotide binding protein (G protein), beta 5b.	Regulator of G-protein signaling 7-like.	0.825
ENSIPUP00000024490	LOC108273767	ENSIPUP00000024490	ENSIPUP00000001014	Guanine nucleotide binding protein (G protein), beta 5b.	Regulator of G-protein signaling 9-like isoform X2.	0.825
ENSIPUP00000024490	LOC108278703	ENSIPUP00000024490	ENSIPUP00000001555	Guanine nucleotide binding protein (G protein), beta 5b.	Regulator of G-protein signaling 9-like isoform X1.	0.825
ENSIPUP00000024490	gpr156	ENSIPUP00000024490	ENSIPUP00000035630	Guanine nucleotide binding protein (G protein), beta 5b.	Probable G-protein coupled receptor 156.	0.466
ENSIPUP00000024490	rgs11	ENSIPUP00000024490	ENSIPUP00000035807	Guanine nucleotide binding protein (G protein), beta 5b.	Regulator of G-protein signaling 11.	0.825
ENSIPUP00000024490	rgs7	ENSIPUP00000024490	ENSIPUP00000006899	Guanine nucleotide binding protein (G protein), beta 5b.	Regulator of G-protein signaling 7 isoform X1.	0.825
LOC108257637	ENSIPUP00000024490	ENSIPUP00000028239	ENSIPUP00000024490	Regulator of G-protein signaling 6-like.	Guanine nucleotide binding protein (G protein), beta 5b.	0.825
LOC108257637	LOC108268005	ENSIPUP00000028239	ENSIPUP00000018605	Regulator of G-protein signaling 6-like.	Probable G-protein coupled receptor 158.	0.595
LOC108257637	LOC108273767	ENSIPUP00000028239	ENSIPUP00000001014	Regulator of G-protein signaling 6-like.	Regulator of G-protein signaling 9-like isoform X2.	0.503
LOC108257637	LOC108278703	ENSIPUP00000028239	ENSIPUP00000001555	Regulator of G-protein signaling 6-like.	Regulator of G-protein signaling 9-like isoform X1.	0.503
LOC108257637	gnb5	ENSIPUP00000028239	ENSIPUP00000013737	Regulator of G-protein signaling 6-like.	Guanine Nucleotide-binding protein subunit beta-5.	0.825
LOC108257637	rgs11	ENSIPUP00000028239	ENSIPUP00000035807	Regulator of G-protein signaling 6-like.	Regulator of G-protein signaling 11.	0.503
LOC108268005	ENSIPUP00000024490	ENSIPUP00000018605	ENSIPUP00000024490	Probable G-protein coupled receptor 158.	Guanine nucleotide binding protein (G protein), beta 5b.	0.577
LOC108268005	LOC108257637	ENSIPUP00000018605	ENSIPUP00000028239	Probable G-protein coupled receptor 158.	Regulator of G-protein signaling 6-like.	0.595
LOC108268005	LOC108269497	ENSIPUP00000018605	ENSIPUP00000021525	Probable G-protein coupled receptor 158.	Regulator of G-protein signaling 7-like.	0.595
LOC108268005	LOC108273767	ENSIPUP00000018605	ENSIPUP00000001014	Probable G-protein coupled receptor 158.	Regulator of G-protein signaling 9-like isoform X2.	0.508
LOC108268005	LOC108278703	ENSIPUP00000018605	ENSIPUP00000001555	Probable G-protein coupled receptor 158.	Regulator of G-protein signaling 9-like isoform X1.	0.508
LOC108268005	ate1	ENSIPUP00000018605	ENSIPUP00000022142	Probable G-protein coupled receptor 158.	Arginyl-tRNA--protein transferase 1; Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. Belongs to the R-transferase family.	0.418