STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108280704Collagen alpha-2(IV) chain-like. (551 aa)    
Predicted Functional Partners:
LOC108277717
Complement C1q tumor necrosis factor-related protein 7-like.
  
     0.521
LOC108269102
Collectin-10-like.
  
 
  0.501
LOC108278436
Complement C1q subcomponent subunit B-like.
  
     0.428
Tep1
Telomerase associated protein 1.
    
 0.424
tep1
Telomerase protein component 1 isoform X1.
    
 0.424
LOC108278434
Complement C1q subcomponent subunit C-like.
   
  0.400
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.