STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108279534Sortilin. (821 aa)    
Predicted Functional Partners:
gak
cyclin-G-associated kinase isoform X2.
     
 0.939
LOC108265432
Sortilin.
  
  
 
0.904
sort1
Sortilin.
  
  
 
0.904
dnajc6
Putative tyrosine-protein phosphatase auxilin isoform X1.
     
 0.612
igf2r
Cation-independent mannose-6-phosphate receptor isoform X2.
    
 0.584
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
    
 
 0.562
cltc
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 0.560
gga2
ADP-ribosylation factor-binding protein GGA2.
    
 
 0.552
gga1
ADP-ribosylation factor-binding protein GGA1.
    
 
 0.552
psma1
Proteasome endopeptidase complex; Belongs to the peptidase T1A family.
    
 
 0.545
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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