STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108268687Polyamine-modulated factor 1-like. (224 aa)    
Predicted Functional Partners:
LOC108257430
Kinetochore-associated protein DSN1 homolog.
    
 0.988
nsl1
Kinetochore-associated protein NSL1 homolog.
    
 0.970
mis12
Protein MIS12 homolog.
    
 0.954
spc24
Kinetochore protein Spc24 isoform X1.
   
 0.926
nuf2
Kinetochore protein Nuf2 isoform X2.
    
 0.908
LOC108258433
Uncharacterized protein LOC108258433 isoform X1.
    
 
 0.813
ndc80
Kinetochore protein NDC80 homolog.
    
 0.813
spc25
Kinetochore protein Spc25 isoform X2.
    
  0.803
bub1
Mitotic checkpoint serine/threonine-protein kinase BUB1 isoform X1.
   
 0.699
ENSIPUP00000023163
annotation not available
   
 0.699
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.