STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSIPUP00000024791annotation not available (893 aa)    
Predicted Functional Partners:
lin9
Protein lin-9 homolog isoform X1.
    
 0.933
lin52
Protein lin-52 homolog.
    
 0.904
lin37
Protein lin-37 homolog isoform X1.
   
 0.857
foxm1
Forkhead box protein M1.
   
 0.811
lin54
Protein lin-54 homolog isoform X1.
    
 0.754
rbbp7
Histone-binding protein RBBP7 isoform X1.
   
 0.681
rbbp4
Histone-binding protein RBBP4.
   
 0.681
e2f1
Transcription factor E2F1.
   
 0.676
mrpl3
39S ribosomal protein L3, mitochondrial isoform X1; Belongs to the universal ribosomal protein uL3 family.
    
 
 0.613
mrpl15
Mitochondrial 39S ribosomal protein L15.
    
 
 0.613
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.