STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108273572Alpha-tectorin-like. (251 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 0.634
slf1
SMC5-SMC6 complex localization factor protein 1 isoform X1.
   
 0.479
ripk4
Receptor-interacting Serine/threonine-protein kinase 4.
   
 0.441
arid4a
AT-rich interactive domain-containing protein 4A.
    
 0.440
arid4b
AT-rich interactive domain-containing protein 4B isoform X2.
    
 0.440
mib2
E3 ubiquitin-protein ligase MIB2 isoform X1.
   
 0.438
bard1
BRCA1-associated RING domain protein 1.
   
 0.435
xpnpep1
xaa-Pro aminopeptidase 1 isoform X1; Belongs to the peptidase M24B family.
     
 0.420
xpnpep2
xaa-Pro aminopeptidase 2; Belongs to the peptidase M24B family.
     
 0.420
xpnpep3
Probable Xaa-Pro aminopeptidase 3.
     
 0.409
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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