STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108260181CTD nuclear envelope phosphatase 1A. (245 aa)    
Predicted Functional Partners:
cnep1r1
Nuclear envelope phosphatase-regulatory subunit 1.
   
 0.832
lpin2
Phosphatidate phosphatase LPIN2 isoform X1.
    
 0.813
LOC108275291
Phosphatidate phosphatase LPIN1-like.
    
 0.813
lpin1
Phosphatidate phosphatase LPIN1 isoform X1.
    
 0.813
LOC108271928
Phosphatidate phosphatase LPIN2-like isoform X1.
    
 0.813
gtf2f1
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.811
polr2g
DNA-directed RNA polymerase II subunit RPB7.
    
 0.717
polr2d
DNA-directed RNA polymerase II subunit RPB4.
    
 0.682
timm21
Mitochondrial import inner membrane translocase subunit Tim21.
    
 0.668
polr2c
DNA-directed RNA polymerase II subunit RPB3 isoform X1.
    
 0.636
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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