STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
capn7Calpain-7; Belongs to the peptidase C2 family. (815 aa)    
Predicted Functional Partners:
LOC108278339
Calpain small subunit 1-like.
   
 0.768
capns1
Calpain small subunit 1.
   
 0.768
cast
Calpastatin isoform X1.
   
 0.675
oxnad1
Oxidoreductase NAD-binding domain-containing protein 1.
   
  
 0.565
itsn2
LOW QUALITY PROTEIN: intersectin-2.
   
 
  0.546
ENSIPUP00000019729
annotation not available
   
 
  0.546
LOC108269989
Intersectin-2-like isoform X1.
   
 
  0.546
tmem132e
Transmembrane protein 132E isoform X1.
      
 0.510
snai3
Zinc finger protein SNAI3.
   
  
 0.460
lrguk
Leucine-rich repeat and guanylate kinase domain-containing protein isoform X1.
   
 
 0.455
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.