STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lhfpl5LHFPL tetraspan subfamily member 5b. (223 aa)    
Predicted Functional Partners:
LOC113581342
Protocadherin-related 15a.
   
 0.758
TMC1
Transmembrane channel-like protein.
   
 
 0.711
pcdh15
Protocadherin-related 15b.
   
 0.657
cdh23
Cadherin-related 23.
   
 0.537
ENSEEEP00000002473
Calcium and integrin binding family member 2.
   
 
 0.521
LOC113567565
Uncharacterized protein.
   
 
 0.521
tmie
Uncharacterized protein.
     
 0.521
LOC113586943
Transmembrane channel-like protein.
   
 
 0.479
tmc3
Transmembrane channel-like protein.
   
 
 0.452
ush1c
Usher syndrome 1C.
      
 0.442
Your Current Organism:
Electrophorus electricus
NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.