STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113591639Xylosyltransferase I. (607 aa)    
Predicted Functional Partners:
b4galt7
Uncharacterized protein.
     
 0.948
xylt2
Uncharacterized protein.
  
  
 
0.902
sdc1
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
 0.718
dcn
Decorin; May affect the rate of fibrils formation.
    
 0.531
uxs1
Uncharacterized protein.
   
  
 0.525
b3galt6
Hexosyltransferase.
    
 
 0.519
LOC113567810
Family with sequence similarity 20, member B (H. sapiens).
      
 0.513
LOC113577993
Fam20C domain-containing protein.
      
 0.513
bcan
Brevican.
     
 0.488
SDC3
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
 0.461
Your Current Organism:
Electrophorus electricus
NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish
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