LOC113568059 protein (Electrophorus electricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC113568059

Stress-associated endoplasmic reticulum protein; May interact with target proteins during translocation into the lumen of the endoplasmic reticulum. May protect unfolded target proteins against degradation and facilitate correct glycosylation. Belongs to the RAMP4 family. (173 aa)

Predicted Functional Partners:

sec61b

0.618

sec61g

0.444

LOC113579396

0.419

LOC113577866

0.419

sgtb

0.414

ttc3

0.414

sgta

0.414

ttc33

0.412

stx5

0.403

LOC113590820

0.403

Your Current Organism:

Electrophorus electricus

NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC113568059	LOC113577866	ENSEEEP00000023125	ENSEEEP00000029535	Stress-associated endoplasmic reticulum protein; May interact with target proteins during translocation into the lumen of the endoplasmic reticulum. May protect unfolded target proteins against degradation and facilitate correct glycosylation. Belongs to the RAMP4 family.	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	0.419
LOC113568059	LOC113579396	ENSEEEP00000023125	ENSEEEP00000010189	Stress-associated endoplasmic reticulum protein; May interact with target proteins during translocation into the lumen of the endoplasmic reticulum. May protect unfolded target proteins against degradation and facilitate correct glycosylation. Belongs to the RAMP4 family.	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	0.419
LOC113568059	LOC113590820	ENSEEEP00000023125	ENSEEEP00000039739	Stress-associated endoplasmic reticulum protein; May interact with target proteins during translocation into the lumen of the endoplasmic reticulum. May protect unfolded target proteins against degradation and facilitate correct glycosylation. Belongs to the RAMP4 family.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.403
LOC113568059	sec61b	ENSEEEP00000023125	ENSEEEP00000040139	Stress-associated endoplasmic reticulum protein; May interact with target proteins during translocation into the lumen of the endoplasmic reticulum. May protect unfolded target proteins against degradation and facilitate correct glycosylation. Belongs to the RAMP4 family.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.618
LOC113568059	sec61g	ENSEEEP00000023125	ENSEEEP00000044760	Stress-associated endoplasmic reticulum protein; May interact with target proteins during translocation into the lumen of the endoplasmic reticulum. May protect unfolded target proteins against degradation and facilitate correct glycosylation. Belongs to the RAMP4 family.	Uncharacterized protein.	0.444
LOC113568059	sgta	ENSEEEP00000023125	ENSEEEP00000051541	Stress-associated endoplasmic reticulum protein; May interact with target proteins during translocation into the lumen of the endoplasmic reticulum. May protect unfolded target proteins against degradation and facilitate correct glycosylation. Belongs to the RAMP4 family.	TPR_REGION domain-containing protein.	0.414
LOC113568059	sgtb	ENSEEEP00000023125	ENSEEEP00000023368	Stress-associated endoplasmic reticulum protein; May interact with target proteins during translocation into the lumen of the endoplasmic reticulum. May protect unfolded target proteins against degradation and facilitate correct glycosylation. Belongs to the RAMP4 family.	Small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta.	0.414
LOC113568059	stx5	ENSEEEP00000023125	ENSEEEP00000034720	Stress-associated endoplasmic reticulum protein; May interact with target proteins during translocation into the lumen of the endoplasmic reticulum. May protect unfolded target proteins against degradation and facilitate correct glycosylation. Belongs to the RAMP4 family.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.403
LOC113568059	ttc3	ENSEEEP00000023125	ENSEEEP00000025946	Stress-associated endoplasmic reticulum protein; May interact with target proteins during translocation into the lumen of the endoplasmic reticulum. May protect unfolded target proteins against degradation and facilitate correct glycosylation. Belongs to the RAMP4 family.	Tetratricopeptide repeat domain 3.	0.414
LOC113568059	ttc33	ENSEEEP00000023125	ENSEEEP00000029605	Stress-associated endoplasmic reticulum protein; May interact with target proteins during translocation into the lumen of the endoplasmic reticulum. May protect unfolded target proteins against degradation and facilitate correct glycosylation. Belongs to the RAMP4 family.	TPR_REGION domain-containing protein.	0.412
LOC113577866	LOC113568059	ENSEEEP00000029535	ENSEEEP00000023125	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	Stress-associated endoplasmic reticulum protein; May interact with target proteins during translocation into the lumen of the endoplasmic reticulum. May protect unfolded target proteins against degradation and facilitate correct glycosylation. Belongs to the RAMP4 family.	0.419
LOC113577866	LOC113590820	ENSEEEP00000029535	ENSEEEP00000039739	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.413
LOC113577866	sec61b	ENSEEEP00000029535	ENSEEEP00000040139	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.535
LOC113577866	sgta	ENSEEEP00000029535	ENSEEEP00000051541	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	TPR_REGION domain-containing protein.	0.489
LOC113577866	sgtb	ENSEEEP00000029535	ENSEEEP00000023368	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	Small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta.	0.489
LOC113577866	stx5	ENSEEEP00000029535	ENSEEEP00000034720	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.413
LOC113577866	ttc3	ENSEEEP00000029535	ENSEEEP00000025946	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	Tetratricopeptide repeat domain 3.	0.489
LOC113577866	ttc33	ENSEEEP00000029535	ENSEEEP00000029605	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	TPR_REGION domain-containing protein.	0.458
LOC113579396	LOC113568059	ENSEEEP00000010189	ENSEEEP00000023125	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	Stress-associated endoplasmic reticulum protein; May interact with target proteins during translocation into the lumen of the endoplasmic reticulum. May protect unfolded target proteins against degradation and facilitate correct glycosylation. Belongs to the RAMP4 family.	0.419
LOC113579396	LOC113590820	ENSEEEP00000010189	ENSEEEP00000039739	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.413

page 1 of 5

Server load: low (18%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About