STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113582616USP domain-containing protein; Belongs to the peptidase C19 family. (2576 aa)    
Predicted Functional Partners:
ddb2
WD_REPEATS_REGION domain-containing protein.
    
 0.757
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.734
zfand4
Uncharacterized protein.
    
  0.652
LOC113579852
Intersectin 2b.
   
 
  0.641
ENSEEEP00000037989
Uncharacterized protein.
   
 
  0.641
ENSEEEP00000000771
Uncharacterized protein.
   
 
  0.640
rps27a
Ubiquitin-like domain-containing protein.
    
  0.628
pex10
RING-type domain-containing protein.
     
 0.575
ENSEEEP00000000828
Uncharacterized protein; Belongs to the synuclein family.
    
 0.569
ENSEEEP00000022922
Peroxisomal biogenesis factor 5-like b.
    
 0.563
Your Current Organism:
Electrophorus electricus
NCBI taxonomy Id: 8005
Other names: E. electricus, electric eel, electric knifefish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.