STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105014640Lamin L3; Belongs to the intermediate filament family. (659 aa)    
Predicted Functional Partners:
LOC105010953
Barrier to autointegration factor 1.
   
 0.688
LOC109615862
Uncharacterized protein.
   
 0.688
lemd3
LEM domain containing 3.
    
 0.684
LOC105026644
Uncharacterized protein.
   
 0.677
casp6
Caspase 6, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.
   
 0.597
LOC105006488
SUN domain-containing protein.
    
 0.537
LOC105012873
SUN domain-containing protein.
    
 0.537
LOC105013737
SUN domain-containing protein.
    
 0.520
LOC105007609
RNA binding motif protein 39b.
   
 0.489
LOC105017458
RNA binding motif protein 39a.
   
 0.489
Your Current Organism:
Esox lucius
NCBI taxonomy Id: 8010
Other names: E. lucius, northern pike
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.