STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105012452RBR-type E3 ubiquitin transferase. (1348 aa)    
Predicted Functional Partners:
LOC105014760
Ubiquitin-conjugating enzyme E2L 3a; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.621
Rnf216
Ring finger protein 216.
    
 0.591
rps27a
Ribosomal protein S27a.
    
 0.583
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.544
birc6
Baculoviral IAP repeat containing 6.
    
 0.535
ENSELUP00000038875
Uncharacterized protein.
   
 
 0.534
LOC105024444
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.502
LOC105026211
Ubiquitin-like domain-containing protein.
    
  0.502
ENSELUP00000033765
CWF19 like cell cycle control factor 2.
      
 0.461
zfand4
Zinc finger, AN1-type domain 4.
   
 0.450
Your Current Organism:
Esox lucius
NCBI taxonomy Id: 8010
Other names: E. lucius, northern pike
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.