Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
srrm1Serine/arginine repetitive matrix 1. (874 aa)    
Predicted Functional Partners:
LOC105030401
Cwf21 domain-containing protein.
   
 0.995
rbm25
RNA binding motif protein 25b.
   
 0.987
LOC105015939
RNA binding motif protein 25a.
   
 0.987
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
    
 
 0.984
eif4a3
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
    
 0.974
LOC105007889
RRM domain-containing protein.
   
 0.971
rnps1
RNA binding protein S1, serine-rich domain.
   
 0.971
LOC105012898
Aly/REF export factor.
   
 0.965
LOC105021606
RRM domain-containing protein.
   
 0.965
upf3b
UPF3B regulator of nonsense mediated mRNA decay.
    
 0.962
Your Current Organism:
Esox lucius
NCBI taxonomy Id: 8010
Other names: E. lucius, northern pike
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