STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105022303Ankyrin repeat domain 52a. (1080 aa)    
Predicted Functional Partners:
PPP6C
Serine/threonine-protein phosphatase.
    
 0.652
ppp6c
Serine/threonine-protein phosphatase.
    
 0.652
LOC105020220
Protein phosphatase 6, regulatory subunit 2a.
    
 0.617
ppp6r3
Protein phosphatase 6, regulatory subunit 3.
    
 0.617
LOC105022203
Protein phosphatase 6, regulatory subunit 2b.
    
 0.617
ift81
Intraflagellar transport 81 homolog.
    
 0.514
LOC105020694
V-rel avian reticuloendotheliosis viral oncogene homolog A.
   
 0.476
relb
V-rel avian reticuloendotheliosis viral oncogene homolog B.
   
 0.476
rel
V-rel avian reticuloendotheliosis viral oncogene homolog.
   
 0.476
ift88
Intraflagellar transport 88 homolog.
    
 0.475
Your Current Organism:
Esox lucius
NCBI taxonomy Id: 8010
Other names: E. lucius, northern pike
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.