STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105005898Contactin 3b. (1031 aa)    
Predicted Functional Partners:
LOC105016909
Carbonic anhydrase XVI b.
    
 0.645
ENSELUP00000030999
Protein tyrosine phosphatase receptor type Ga.
    
 0.645
csrp1
Cysteine and glycine-rich protein 1b.
      
 0.617
irx1
Iroquois homeobox 1b.
      
 0.613
LOC105019360
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
      
 0.593
LOC105024267
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
      
 0.593
nfasc
Neurofascin homolog (chicken) a.
    
0.562
chl1
Cell adhesion molecule L1-like b.
    
0.562
ENSELUP00000008926
L1 cell adhesion molecule, paralog a.
    
0.562
LOC105024872
Neuronal cell adhesion molecule a.
    
0.562
Your Current Organism:
Esox lucius
NCBI taxonomy Id: 8010
Other names: E. lucius, northern pike
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.