STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105019845USP domain-containing protein; Belongs to the peptidase C19 family. (2592 aa)    
Predicted Functional Partners:
ddb2
Damage-specific DNA binding protein 2.
    
 0.775
zfand4
Zinc finger, AN1-type domain 4.
    
  0.666
ENSELUP00000030223
Uncharacterized protein.
   
 
  0.663
ENSELUP00000038179
Intersectin 2b.
   
 
  0.663
rps27a
Ribosomal protein S27a.
    
  0.642
ENSELUP00000038875
Uncharacterized protein.
   
 
 0.633
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.633
pex10
Peroxisomal biogenesis factor 10.
     
 0.600
SNCA
Alpha-synuclein; Belongs to the synuclein family.
    
 0.598
pex5
Peroxisomal biogenesis factor 5.
    
 0.596
Your Current Organism:
Esox lucius
NCBI taxonomy Id: 8010
Other names: E. lucius, northern pike
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.