STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105012017RRM domain-containing protein. (1350 aa)    
Predicted Functional Partners:
crnkl1
Crooked neck pre-mRNA splicing factor 1.
   
 0.935
bud31
BUD31 homolog.
   
 0.932
snw1
SNW domain containing 1.
   
 0.929
xab2
XPA binding protein 2.
   
 0.929
isy1
ISY1 splicing factor homolog.
   
 0.919
aqr
Aquarius intron-binding spliceosomal factor.
    
 0.877
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 
 0.851
plrg1
Pleiotropic regulator 1.
   
 
 0.848
eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 
 0.835
prpf8
Pre-mRNA processing factor 8.
    
 
 0.832
Your Current Organism:
Esox lucius
NCBI taxonomy Id: 8010
Other names: E. lucius, northern pike
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.