STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105026854Zinc finger protein 36, C3H type-like 1a. (395 aa)    
Predicted Functional Partners:
LOC105013205
MAPK activated protein kinase 2b.
    
 0.962
exosc8
Exosome component 8.
   
  0.750
xrn1
5'-3' exoribonuclease 1.
    
 0.750
dcp2
Decapping mRNA 2.
   
 0.663
cnot1
CCR4-NOT transcription complex, subunit 1.
    
 
 0.639
exosc1
Exosome component 1.
     
 0.602
dcp1a
Decapping mRNA 1A.
    
 0.569
exosc2
Exosome component 2.
    
 0.561
exosc5
Exosome component 5.
    
 0.540
LOC105017320
MAPK activated protein kinase 3; Belongs to the protein kinase superfamily.
    
 0.532
Your Current Organism:
Esox lucius
NCBI taxonomy Id: 8010
Other names: E. lucius, northern pike
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.