Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ENSELUP00000023572 | ENSELUP00000026048 | ENSELUP00000023572 | ENSELUP00000026048 | PHD finger protein 21Aa. | REST corepressor 2. | 0.738 |
ENSELUP00000023572 | hmg20a | ENSELUP00000023572 | ENSELUP00000024493 | PHD finger protein 21Aa. | High mobility group 20A. | 0.713 |
ENSELUP00000023572 | hmg20b | ENSELUP00000023572 | ENSELUP00000038767 | PHD finger protein 21Aa. | High mobility group 20B. | 0.931 |
ENSELUP00000023572 | kdm1a | ENSELUP00000023572 | ENSELUP00000014706 | PHD finger protein 21Aa. | Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family. | 0.932 |
ENSELUP00000023572 | rcor1 | ENSELUP00000023572 | ENSELUP00000003199 | PHD finger protein 21Aa. | REST corepressor 1. | 0.738 |
ENSELUP00000026048 | ENSELUP00000023572 | ENSELUP00000026048 | ENSELUP00000023572 | REST corepressor 2. | PHD finger protein 21Aa. | 0.738 |
ENSELUP00000026048 | LOC105018667 | ENSELUP00000026048 | ENSELUP00000025826 | REST corepressor 2. | PHD finger protein 21Ab. | 0.738 |
ENSELUP00000026048 | SNAI2 | ENSELUP00000026048 | ENSELUP00000022874 | REST corepressor 2. | Snail family transcriptional repressor 2. | 0.531 |
ENSELUP00000026048 | hmg20a | ENSELUP00000026048 | ENSELUP00000024493 | REST corepressor 2. | High mobility group 20A. | 0.620 |
ENSELUP00000026048 | hmg20b | ENSELUP00000026048 | ENSELUP00000038767 | REST corepressor 2. | High mobility group 20B. | 0.820 |
ENSELUP00000026048 | kdm1a | ENSELUP00000026048 | ENSELUP00000014706 | REST corepressor 2. | Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family. | 0.954 |
LOC105018667 | ENSELUP00000026048 | ENSELUP00000025826 | ENSELUP00000026048 | PHD finger protein 21Ab. | REST corepressor 2. | 0.738 |
LOC105018667 | hmg20a | ENSELUP00000025826 | ENSELUP00000024493 | PHD finger protein 21Ab. | High mobility group 20A. | 0.713 |
LOC105018667 | hmg20b | ENSELUP00000025826 | ENSELUP00000038767 | PHD finger protein 21Ab. | High mobility group 20B. | 0.931 |
LOC105018667 | kdm1a | ENSELUP00000025826 | ENSELUP00000014706 | PHD finger protein 21Ab. | Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family. | 0.932 |
LOC105018667 | rcor1 | ENSELUP00000025826 | ENSELUP00000003199 | PHD finger protein 21Ab. | REST corepressor 1. | 0.738 |
SNAI2 | ENSELUP00000026048 | ENSELUP00000022874 | ENSELUP00000026048 | Snail family transcriptional repressor 2. | REST corepressor 2. | 0.531 |
SNAI2 | hmg20a | ENSELUP00000022874 | ENSELUP00000024493 | Snail family transcriptional repressor 2. | High mobility group 20A. | 0.620 |
SNAI2 | hmg20b | ENSELUP00000022874 | ENSELUP00000038767 | Snail family transcriptional repressor 2. | High mobility group 20B. | 0.592 |
SNAI2 | kdm1a | ENSELUP00000022874 | ENSELUP00000014706 | Snail family transcriptional repressor 2. | Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family. | 0.842 |
page 1 of 3