Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LOC105012183 | NCBP1 | ENSELUP00000001459 | ENSELUP00000023683 | Zgc:158803. | Nuclear cap binding protein subunit 1. | 0.799 |
LOC105012183 | Sf3b3 | ENSELUP00000001459 | ENSELUP00000015415 | Zgc:158803. | Splicing factor 3b, subunit 3. | 0.856 |
LOC105012183 | ddx46 | ENSELUP00000001459 | ENSELUP00000019844 | Zgc:158803. | DEAD (Asp-Glu-Ala-Asp) box polypeptide 46. | 0.725 |
LOC105012183 | luc7l3 | ENSELUP00000001459 | ENSELUP00000003486 | Zgc:158803. | LUC7-like 3 pre-mRNA splicing factor. | 0.506 |
LOC105012183 | ncbp2 | ENSELUP00000001459 | ENSELUP00000019596 | Zgc:158803. | Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] | 0.862 |
LOC105012183 | prpf40a | ENSELUP00000001459 | ENSELUP00000016319 | Zgc:158803. | PRP40 pre-mRNA processing factor 40 homolog A. | 0.479 |
LOC105012183 | rbm25 | ENSELUP00000001459 | ENSELUP00000030544 | Zgc:158803. | RNA binding motif protein 25b. | 0.895 |
LOC105012183 | sart1 | ENSELUP00000001459 | ENSELUP00000015855 | Zgc:158803. | Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. | 0.857 |
LOC105012183 | snrpa1 | ENSELUP00000001459 | ENSELUP00000025195 | Zgc:158803. | Small nuclear ribonucleoprotein polypeptide A. | 0.872 |
NCBP1 | LOC105012183 | ENSELUP00000023683 | ENSELUP00000001459 | Nuclear cap binding protein subunit 1. | Zgc:158803. | 0.799 |
NCBP1 | Sf3b3 | ENSELUP00000023683 | ENSELUP00000015415 | Nuclear cap binding protein subunit 1. | Splicing factor 3b, subunit 3. | 0.957 |
NCBP1 | ddx46 | ENSELUP00000023683 | ENSELUP00000019844 | Nuclear cap binding protein subunit 1. | DEAD (Asp-Glu-Ala-Asp) box polypeptide 46. | 0.836 |
NCBP1 | luc7l3 | ENSELUP00000023683 | ENSELUP00000003486 | Nuclear cap binding protein subunit 1. | LUC7-like 3 pre-mRNA splicing factor. | 0.730 |
NCBP1 | ncbp2 | ENSELUP00000023683 | ENSELUP00000019596 | Nuclear cap binding protein subunit 1. | Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] | 0.999 |
NCBP1 | prpf40a | ENSELUP00000023683 | ENSELUP00000016319 | Nuclear cap binding protein subunit 1. | PRP40 pre-mRNA processing factor 40 homolog A. | 0.449 |
NCBP1 | rbm25 | ENSELUP00000023683 | ENSELUP00000030544 | Nuclear cap binding protein subunit 1. | RNA binding motif protein 25b. | 0.928 |
NCBP1 | sart1 | ENSELUP00000023683 | ENSELUP00000015855 | Nuclear cap binding protein subunit 1. | Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. | 0.938 |
NCBP1 | snrpa1 | ENSELUP00000023683 | ENSELUP00000025195 | Nuclear cap binding protein subunit 1. | Small nuclear ribonucleoprotein polypeptide A. | 0.915 |
NCBP1 | srrm1 | ENSELUP00000023683 | ENSELUP00000002003 | Nuclear cap binding protein subunit 1. | Serine/arginine repetitive matrix 1. | 0.908 |
Sf3b3 | LOC105012183 | ENSELUP00000015415 | ENSELUP00000001459 | Splicing factor 3b, subunit 3. | Zgc:158803. | 0.856 |
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