STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chd5Chromodomain helicase DNA binding protein 5. (1804 aa)    
Predicted Functional Partners:
LOC105011554
MBD domain-containing protein.
    
 0.769
LOC105020551
Uncharacterized protein.
    
 0.748
LOC105015627
Retinoblastoma binding protein 4.
   
 0.746
rbbp7
Retinoblastoma binding protein 4, like.
   
 0.746
RBBP4
RB binding protein 4, chromatin remodeling factor.
   
 0.746
ENSELUP00000001617
AT rich interactive domain 4A (RBP1-like).
    
 0.739
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.739
ENSELUP00000022872
Metastasis associated 1.
   
 0.720
LOC105006061
Metastasis associated 1 family, member 3.
   
 0.720
mta2
Metastasis associated 1 family, member 2.
   
 0.720
Your Current Organism:
Esox lucius
NCBI taxonomy Id: 8010
Other names: E. lucius, northern pike
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.