STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105015344Calpain 3b; Belongs to the peptidase C2 family. (782 aa)    
Predicted Functional Partners:
ENSELUP00000009974
Calpastatin.
   
 0.595
LOC105024137
Calpain small subunit 1.
   
0.549
LOC105011036
Uncharacterized protein.
   
0.549
CAPNS1
Calpain small subunit 1.
   
0.549
ENSELUP00000030223
Uncharacterized protein.
   
 
  0.544
ENSELUP00000038179
Intersectin 2b.
   
 
  0.544
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
   
 
 0.485
pef1
Penta-EF-hand domain containing 1.
   
0.430
pdcd6
Uncharacterized protein.
   
0.430
LOC105019252
Sorcin.
   
0.418
Your Current Organism:
Esox lucius
NCBI taxonomy Id: 8010
Other names: E. lucius, northern pike
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.