STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060VYL0Uncharacterized protein. (332 aa)    
Predicted Functional Partners:
A0A060VUG2
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 0.992
A0A060VX19
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 0.992
A0A060WHP1
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
   
 0.983
A0A060WUB8
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
   
 0.983
A0A060W9Z0
Uncharacterized protein.
  
 
0.961
A0A060X7W3
Uncharacterized protein.
  
 
0.961
A0A060VZR5
PX domain-containing protein.
   
 
 0.937
A0A060XJE2
Uncharacterized protein.
   
 
 0.937
A0A060W8S7
PX domain-containing protein.
   
 0.920
A0A060WZG0
PX domain-containing protein.
   
 0.920
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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